After this update i have some zeros

This will not lead to disqualification, just stat is missing.
The sqlite3 should have version not older than v3.25.2
The weird thing, that your storage folder is not writeable.

Please, try with a docker version, not local (because installed version of sqlite3 is too old)
If you have a lot of free RAM, you can use the tmpfs instead of the disk for all operations (you need to have 2x amount of RAM for size of the db, see Used_serial.db malformed for example). But this command uses only disk with data:

sudo docker run --rm -it --mount type=bind,source=/home/usr/storj/storage/,destination=/storage sstc/sqlite3 sh
/data#

Then process from p.10

If storage is still not writeable, then please check your disk with fsck in a maintenance mode, seems something wrong with it.